@article {2812, title = {Distance-dependent magnetic resonance tuning as a versatile MRI sensing platform for biological targets}, journal = {Nature Materials}, volume = {16}, year = {2017}, pages = {537 - 542}, chapter = {537}, author = {Choi, J.-S. and Kim, S. and Yoo, D. and Shin, T.-H. and Kim, H. and Gomes, M.D. and Kim, S. H. and Pines, A. and Cheon, J.} } @article {269, title = {Distortion-free magnetic resonance imaging in the zero-field limit}, journal = {Journal of Magnetic Resonance}, volume = {200}, year = {2009}, note = {J Magn Reson526AWTimes Cited:6Cited References Count:29}, month = {Oct}, pages = {285-290}, abstract = {
MRI is a powerful technique for clinical diagnosis and materials characterization. Images are acquired in a homogeneous static magnetic field much higher than the fields generated across the field of view by the spatially encoding field gradients. Without such a high field, the concomitant components of the field gradient dictated by Maxwell\&$\#$39;s equations lead to severe distortions that make imaging impossible with conventional MRI encoding. In this paper, we present a distortion-free image of a phantom acquired with a fundamentally different methodology in which the applied static field approaches zero. Our technique involves encoding with pulses of uniform and gradient field, and acquiring the magnetic field signals with a SQUID. The method can be extended to weak ambient fields, potentially enabling imaging in the Earth\&$\#$39;s field without cancellation coils or shielding. Other potential applications include quantum information processing and fundamental studies of long-range ferromagnetic interactions. (C) 2009 Elsevier Inc. All rights reserved.
}, keywords = {gradients}, isbn = {1090-7807}, doi = {Doi 10.1016/J.Jmr.2009.07.016}, url = {Variable angle spinning (VAS) experiments can be used to measure long-range dipolar couplings and provide structural information about molecules in oriented media. We present a probe design for this type of experiment using a contactless resonator. In this circuit, RF power is transmitted wirelessly via coaxial capacitive coupling where the coupling efficiency is improved by replacing the ordinary sample coil with a double frequency resonator. Our probe constructed out of this design principle has shown favorable properties at variable angle conditions. Moreover, a switched angle spinning correlation experiment is performed to demonstrate the probe\&$\#$39;s capability to resolve dipolar couplings in strongly aligned molecules. (c) 2007 Elsevier Inc. All rights reserved.
}, keywords = {magnetism}, isbn = {1090-7807}, doi = {Doi 10.1016/J.Jmr.2007.06.006}, url = {Remote detection nuclear magnetic resonance and magnetic resonance imaging can be used to study fluid flow and dispersion in a porous medium from a purely Eulerian point of view (i.e., in a laboratory frame of reference). Information about fluid displacement is obtained on a macroscopic scale in a long-time regime, while local velocity distributions are averaged out. It is shown how these experiments can be described using the common flow propagator formalism and how experimental data can be analyzed to obtain effective porosity, flow velocity inside the porous medium, fluid dispersion and flow tracing of fluid. (C) 2007 Elsevier Inc. All rights reserved.
}, keywords = {flow}, isbn = {0730-725X}, doi = {Doi 10.1016/J.Mri.2006.11.011}, url = {Cryptophane cages serve as host molecules to a Xe atom. Functionalization of cryptophane-A has permitted the development of Xe as a biosensor. Synthetic routes used to prepare cryptophanes result in racemic mixtures of the chiral cages. In the preparation of a tethered cryptophane-A cage for biosensor applications, some achiral and chiral substituents such as left-handed amino acids have been used. When the substituent is achiral, the NMR signal of the Xe atom in the functionalized cage in solution is a single isotropic peak, since the Xe shielding tensor components in the R and L cages differ by no more than the signs of the off-diagonal elements. Chiral substituents can split the cage-encapsulated Xe NMR signal into one or more sets of doublets, depending on the number of asymmetric centers in the substituent. We carry out quantum mechanical calculations of Xe nuclear magnetic shielding for the Xe atom at the same strategic position within an L cryptophane-A cage, under the influence of chiral potentials that represent for r or I substituents outside the cage. Calculations of the Xe shielding response in the Lr and LI diastereomeric pairs permit the prediction of the relative order of the Xe chemical shifts in solutions containing the RI and LI diastereomers. Where the substituent itself possesses two chiral centers, comparison of the calculated isotropic shielding responses in the Llr, Lrl, RIl, and Lrr systems, respectively, permits the prediction of the Xe spectrum of diastereomeric systems in solutions containing Llr, RIr, LIl, and RIl systems. Assignment of the peaks observed in the experimental Xe NMR spectra is therefore possible, without having to undertake the difficult synthetic route that produces a single optically pure enantiomer.
}, keywords = {chirality}, isbn = {0002-7863}, doi = {Doi 10.1021/Ja066661z}, url = {The chemical shift of the Xe-129 NMR signal has been shown to be extremely sensitive to the local environment around the atom and has been used to follow processes such as ligand binding by bacterial periplasmic binding proteins. Here we show that the Xe-129 shift can sense more subtle changes: magnesium binding, BeF3- activation, and peptide binding by the Escherichia coli chemotaxis Y protein. H-1-N-15 correlation spectroscopy and X-ray crystallography were used to identify two xenon-binding cavities in CheY that are primarily responsible for the shift changes. One site is near the active site, and the other is near the peptide binding site.
}, keywords = {cavity}, isbn = {0961-8368}, doi = {Doi 10.1110/Ps.041231005}, url = {NMR-based biosensors that utilize laser-polarized xenon offer potential advantages beyond current sensing technologies. These advantages include the capacity to simultaneously detect multiple analytes, the applicability to in vivo spectroscopy and imaging, and the possibility of \"remote\" amplified detection. Here, we present a detailed NMR characterization of the binding of a biotin-derivatized caged-xenon sensor to avidin. Binding of \"functionalized\" xenon to avidin leads to a change in the chemical shift of the encapsulated xenon in addition to a broadening of the resonance, both of which serve as NMR markers of ligand-target interaction. A control experiment in which the biotin-binding site of avidin was blocked with native biotin showed no such spectral changes, confirming that only specific binding, rather than nonspecific contact, between avidin and functionalized xenon leads to the effects on the xenon NMR spectrum. The exchange rate of xenon (between solution and cage) and the xenon spin-lattice relaxation rate were not changed significantly upon binding. We describe two methods for enhancing the signal from functionalized xenon by exploiting the laser-polarized xenon magnetization reservoir. We also show that the xenon chemical shifts are distinct for xenon encapsulated in different diastereomeric cage molecules. This demonstrates the potential for tuning the encapsulated xenon chemical shift, which is a key requirement for being able to multiplex the biosensor.
}, keywords = {drug discovery}, isbn = {0002-7863}, doi = {Doi 10.1021/Ja0483037}, url = {Solid powder samples of complexes of the endometallofullerenes (EMF) La@C-82 and Y@C-82 with hexamethylphosphoramide (HMPA) were studied by magic-angle spinning (MAS) NMR. We have obtained well-resolved P-31 NMR spectra and C-13 NMR spectra for both La-EMF/HMPA and Y-EMF/HMPA and La-139 spectra for the La-EMF/HMPA. The (31)p measurements on La-EMF/HMPA and Y-EMF/HMPA have revealed considerable chemical shifts of (31)p signals relative to pure HMPA. Two-dimensional exchange P-31 experiments revealed that HMPA molecules at different sites in the EMF/HMPA complex do not change positions at a time scale of up to 1 s. Both EMF samples demonstrate a vast chemical shift range for 31p of the bound HMPA molecules. In addition, the La-EMF/HMPA exhibits the enormous spreading of the chemical shifts for La-139. The experimental results suggest that paramagnetic La@C-82 and Y@C-92 in the solid state form clusters (nanoparticles) in which the exchange coupling of the EMF takes place with quenching of the most electron spins.
}, keywords = {complexes}, isbn = {1520-6106}, doi = {Doi 10.1021/Jp048610z}, url = {Xenon-binding sites in proteins have led to a number of applications of xenon in biochemical and structural studies. Here we further develop the utility of Xe-129 NMR in characterizing specific xenon-protein interactions. The sensitivity of the Xe-129 chemical shift to its local environment and the intense signals attainable by optical pumping make xenon a useful NMR reporter of its own interactions with proteins. A method for detecting specific xenon-binding interactions by analysis of Xe-129 chemical shift data is illustrated using the maltose binding protein (MBP) from Escherichia coli as an example. The crystal structure of MBP in the presence of 8 atm of xenon confirms the binding site determined from NMR data. Changes in the structure of the xenon-binding cavity upon the binding of maltose by the protein can account for the sensitivity of the Xe-129 chemical shift to MBP conformation. Xe-129 NMR data for xenon in solution with a number of cavity containing phage T4 lysozyme mutants show that xenon can report on cavity structure. In particular, a correlation exists between cavity size and the binding-induced Xe-129 chemical shift. Further applications of Xe-129 NMR to biochemical assays, including the screening of proteins for xenon binding for crystallography are considered. (C) 2002 Elsevier Science Ltd. All rights reserved
}, keywords = {nonpolar cavity}, isbn = {0022-2836}, doi = {Doi 10.1016/S0022-2836(02)00739-8}, url = {Dynamic NMR microscopy has been used to study xenon gas undergoing Poiseuille flow in the regime where deterministic and stochastic motions are the same order of magnitude. For short observation time, the flow profile images are largely influenced by the longitudinal diffusion, manifested by large displacements in both positive and negative directions. For longer observation time, the effect of the mixing between the fast and slow flow components due to transverse diffusion becomes apparent. A spin-echo version of the dynamic NMR experiment yields images exhibiting strong distortions for longer observation time due to fast diffusion under the \"natural\" gradient from magnetic field inhomogeneity (compared to results obtained with a stimulated echo version). This effect is used as an edge-enhancement filter by employing a longer time duration of the imaging gradient in a stimulated echo experiment. (C) 2001 Academic Press.
}, keywords = {transport}, isbn = {1090-7807}, doi = {Doi 10.1006/Jmre.2000.2283}, url = {A simple method for the determination of backbone dihedral angles in peptides and proteins is presented. The chemical-shift anisotropies (CSA) of the central alanine alpha-carbon in powdered crystalline tripeptides, whose structures have been determined previously by X-ray crystallography, were measured by cross-polarization magic-angle-spinning nuclear magnetic resonance. The experimental CSA values were correlated with ab initio chemical-shielding calculations over Ramanchandran phi/psi space on an N-formyl-L-alanine amide fragment. Using this correlation, phi/psi probability surfaces for one of the tripeptides were calculated based only on the alpha-carbon CSA, allowing a prediction of backbone angles. Dihedral angles predicted by these calculations fall within +/-12 degrees of the values determined by crystallography. This approach should be useful in the determination of solid-slate protein structure.
}, keywords = {crystal-structure}, isbn = {0002-7863}, doi = {Doi 10.1021/Ja970124k}, url = {The quadrupolar and chemical shift tensors, as well as the relative orientation of the two principle axis systems, are accurately determined using a two-dimensional nuclear magnetic resonance technique. Good agreement between experimental and simulated two-dimensional spectra is obtained for a series of rubidium and sodium compounds at multiple magnetic field strengths. Extension of this technique to correlate the quadrupolar and dipolar interactions, as well as the incorporation of a purely isotropic dimension resulting in a three-dimensional experiment is also discussed. (C) 1996 American Institute of Physics.
}, keywords = {line-shapes}, isbn = {0021-9606}, doi = {Doi 10.1063/1.472776}, url = {By means of rotor-synchronized pi-pulses, it is possible to eliminate the spinning sidebands (while retaining their full intensity in the isotropic centerband) that usually arise in dynamic-angle spinning (DAS) NMR. The theory of this approach, dynamic-angle hopping (DAH-180), is described and illustrated with experimental results on quadrupolar nuclei. A magic-angle hopping (MAH-180) version of magic-angle spinning is also possible and can be used in a two-dimensional NMR experiment to produce sideband-free isotropic-anisotropic correlation spectra for spin-1/2 nuclei.
}, keywords = {resolution}, isbn = {0009-2614}, doi = {Doi 10.1016/0009-2614(93)87045-5}, url = {